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paired-end reads
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1.5k
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Merge two BAM files into one paired-end file
paired-end reads
bam file
6.5 years ago
ioannis.vardaxis
▴ 30
1
vote
2
replies
1.5k
views
Counting Distinct Mapped Reads in BAM File of Paired-end Sequencing
rsamtools
paired-end reads
countbam
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
Dario Strbenac
★ 1.5k
0
votes
1
reply
1.2k
views
why merged paired end reads still have strand infomation?
dnaseq
rtracklayer
paired-end reads
6.9 years ago
zwfanwz678
• 0
1
vote
0
replies
1.2k
views
generate table of counts with strand-specific paired-end RNA-seq data
summarizeoverlaps
paired-end reads
readGAlignmentPairs
7.1 years ago
teresati
▴ 10
0
votes
2
replies
1.1k
views
DiffBind PE data
diffbind
paired-end reads
updated 3.5 years ago by
Rory Stark
★ 5.2k • written 7.3 years ago by
rbronste
▴ 60
0
votes
0
replies
1.1k
views
Error in qAlign, QuasR, in paired-end RNA Seq
quasr
paired-end reads
rnaseq
7.4 years ago
guillaume.dachy
• 0
0
votes
0
replies
955
views
Error preprocessReads : Error in writeFastq
quasr
rnaseq
paired-end reads
7.4 years ago
guillaume.dachy
• 0
0
votes
0
replies
946
views
RNA Seq // QuasR : Error while extracting unmapped reads
quasr
quasr error
paired-end reads
rnaseq
7.4 years ago
guillaume.dachy
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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